Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| ESCA | rs7081189 | chr10:126720917 | C/T | 3.63E-5 | 183 | 13.38 | 10.53 | 7.87 | KM Plot |
| ESCA | rs71325098 | chr3:46012391 | A/G | 0 | 182 | 13.35 | 12.6 | 0.8 | KM Plot |
| ESCA | rs71325100 | chr3:46013832 | C/T | 0 | 182 | 13.37 | 12.5 | 0.8 | KM Plot |
| ESCA | rs71325101 | chr3:46015569 | T/C | 0 | 183 | 13.35 | 13.1 | 0.8 | KM Plot |
| ESCA | rs71325102 | chr3:46015933 | T/C | 0 | 183 | 13.35 | 13.1 | 0.8 | KM Plot |
| ESCA | rs71380263 | chr16:1503429 | T/C | 1.25E-7 | 181 | 13.18 | 13.73 | 4 | KM Plot |
| ESCA | rs71384101 | chr16:1523119 | T/C | 1.39E-8 | 183 | 13.37 | 13.1 | 4 | KM Plot |
| ESCA | rs71384102 | chr16:1523300 | G/A | 1.39E-8 | 183 | 13.37 | 13.1 | 4 | KM Plot |
| ESCA | rs7139055 | chr12:123364198 | A/G | 1.62E-6 | 184 | 13.03 | 14.7 | 4.23 | KM Plot |
| ESCA | rs7168649 | chr15:67146903 | T/G | 3.23E-8 | 181 | 13.22 | 15.32 | 3.93 | KM Plot |
| ESCA | rs71721560 | chr7:111248532 | CA/C | 0 | 177 | 13.35 | 14.33 | 0.8 | KM Plot |
| ESCA | rs7175900 | chr15:89277327 | C/A | 3.8E-7 | 177 | 13.37 | 13.17 | 4.15 | KM Plot |
| ESCA | rs7194934 | chr16:8714162 | A/C | 4.72E-5 | 183 | 3.2 | 13.1 | 13.33 | KM Plot |
| ESCA | rs7198809 | chr16:86910387 | G/A | 6.96E-5 | 177 | 13.03 | 15.6 | 2.02 | KM Plot |
| ESCA | rs72464304 | chr19:5057185 | CTG/C | 3.12E-6 | 182 | 13.1 | 14.82 | 2.93 | KM Plot |